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| Registros recuperados: 16 | |
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| Bellec, Laure; Cambon-bonavita, Marie-anne; Cueff-gauchard, Valerie; Durand, Lucile; Gayet, Nicolas; Zeppilli, Daniela. |
| Deep-sea hydrothermal vent meiofauna have been the focus of recent research and the discovery of an abundant well-adapted free-living marine nematode on the Mid-Atlantic Ridge offers new perspectives on adaptations to the vent environment. Indeed, knowledge concerning biological interactions of microbes and meiofauna in marine extreme environments is scarce, especially for nematodes. In this study, we used microscopic observations [fluorescence in situ hybridization (FISH) and scanning electron microscopy (SEM)] and metabarcoding of 16S rRNA to characterize the bacterial community of the nematode species Oncholaimus dyvae, an overlooked but ecologically important vent organism. Detection of bacteria in the buccal cavity and on the cuticle (SEM) and... |
| Tipo: Text |
Palavras-chave: Sulfur-oxidizing bacteria; Lucky Strike vent field; Meiofauna; Nematode; Endosymbiont. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00457/56846/58676.pdf |
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| Vigneron, Adrien; Cruaud, Perrine; Pignet, Patricia; Caprais, Jean-claude; Gayet, Nicolas; Cambon-bonavita, Marie-anne; Godfroy, Anne; Toffin, Laurent. |
| The Sonora Margin cold seeps present on the seafloor a patchiness pattern of white microbial mats surrounded by polychaete and gastropod beds. These surface assemblages are fuelled by abundant organic inputs sedimenting from the water column and upward-flowing seep fluids. Elevated microbial density was observed in the underlying sediments. A previous study on the same samples identified anaerobic oxidation of methane (AOM) as the potential dominant archaeal process in these Sonora Margin sediments, probably catalysed by three clades of archaeal anaerobic methanotrophs (ANME-1, ANME-2 and ANME-3) associated with bacterial syntrophs. In this study, molecular surveys and microscopic observations investigating the diversity of Bacteria involved in AOM... |
| Tipo: Text |
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| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00168/27921/27279.pdf |
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| Fontanier, Christophe; Koho, K. A.; Goni-urriza, M. S.; Deflandre, Bruno; Galaup, S.; Ivanovsky, A.; Gayet, Nicolas; Dennielou, Bernard; Gremare, Antoine; Bichon, S.; Gassie, C.; Anschutz, P.; Duran, R.; Reichart, G. J.. |
| We present ecological and isotopic (δ18O and δ13C) data on benthic foraminifera sampled from 4 deep-sea stations in a pockmark field from the deep-water Niger delta (Gulf of Guinea, Equatorial Atlantic Ocean). In addition, a series of sedimentological and (bio)geochemical data are shown to back up foraminiferal observations. All stations are located within 1.2 km of each other, so prevailing oceanographic conditions can be assumed to be similar at each site. Two of the sites (GMMC-01 and GMMC-02) are located in a pockmark (named “pockmark A”) where current methane seepages were recorded by ROV observations. A third station (GMMC-03) is located in the topographic depression interpreted as a collapsed pockmark (named “pockmark B”). The fourth site (GMMC-04)... |
| Tipo: Text |
Palavras-chave: Niger delta; Hydrate pockmark; Foraminifera; Stable isotopes; Bacteria. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00211/32194/30628.pdf |
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| Duros, Pauline; Silva Jacinto, Ricardo; Dennielou, Bernard; Schmidt, S.; Martinez Lamas, Ruth; Gautier, Emeric; Roubi, Angelique; Gayet, Nicolas. |
| Living (Rose Bengal stained) and dead benthic foraminifera were investigated at 6 deep-sea sites sampled in the Capbreton canyon area (Bay of Biscay, France). Three sites were located along the canyon axis at 301 m, 983 m and 1478 m and 3 stations were positioned on adjacent terraces at 251 m, 894 m and 1454 m. Sedimentary features indicate that frequent sedimentary disturbances of different magnitudes occur along the Capbreton canyon axis and adjacent terraces. Such environmental conditions cause the presence of very particular benthic environments. Along the 6 studied sites, different foraminiferal responses to various sedimentary patterns are observed revealing the complexity of this canyon environment. Some sites (Gitan 3 (canyon axis), Gitan 5 (canyon... |
| Tipo: Text |
Palavras-chave: Benthic foraminifera; Capbreton canyon; Habitat disturbance; Turbidite; Submarine canyon. |
| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00360/47121/47052.pdf |
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| Bellec, Laure; Cambon Bonavita, Marie-anne; Hourdez, Stéphane; Jebbar, Mohamed; Tasiemski, Aurélie; Durand, Lucile; Gayet, Nicolas; Zeppilli, Daniela. |
| Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. We used a multi-approach study based on microscopic observations (Scanning Electron Microscopy and Fluorescence In Situ Hybridization) coupled with an assessment of molecular diversity using metabarcoding based on the 16S rRNA gene. All investigated free-living marine nematode specimens harboured distinct microbial communities (from the surrounding water and sediment and through the seasons) with ectosymbiosis seemed more abundant during summer.... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00494/60614/64098.pdf |
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| Cheize, Marie; Planquette, H.f.; Fitzsimmons, J.n.; Pelleter, Ewan; Sherrell, R.m.; Lambert, Christophe; Bucciarelli, E.; Sarthou, G.; Le Goff, Marion; Liorzou, Celine; Chéron, Sandrine; Viollier, E.; Gayet, Nicolas. |
| A number of trace metals play essential roles in marine ecosystem structure and biological productivity. Until recently, it has been argued that phytoplankton access primarily dissolved iron, while particulate iron was considered a refractory material with little use biologically and limited interaction with the dissolved pool. In order to assess the transfer mechanisms between sediment-sourced particulate trace metals and the dissolved pool, we conducted a 14-month incubation that reacted resuspended sediments with natural seawater, both originating from the Kerguelen area (KEOPS cruises; Southern Ocean), in the dark, and at concentrations replicating natural conditions. Three types of sediments were investigated (named BioSi, BioSi + Ca, and Basalt),... |
| Tipo: Text |
Palavras-chave: Suspended particle dissolution; Sediment; Iron; Manganese; Biogenic silica; Southern Ocean; Kerguelen. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00460/57197/59166.pdf |
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| Cao, Junwei; Birien, Tiphaine; Gayet, Nicolas; Huang, Zhaobin; Shao, Zongze; Jebbar, Mohamed; Alain, Karine. |
| A novel sulfur-reducing bacterium, strain K6013(T), was isolated from a sulfide sample collected at a depth of 2771 m from a high-temperature hydrothermal vent in the Indian Ocean. Cells were Gram-stain-negative, anaerobic, motile rods (0.92.2 x 0.4-0.6 mu m). The strain grew at NaCl concentrations ranging from 1 to 4.5% (w/v) (optimum 2.5 %), at pH 5 to 8 (optimum pH 6), and at temperatures between 40 and 75 degrees C (optimum 65 degrees C). K6013(T) was an obligate chemolithoautotroph, using thiosulfate, sulfur and nitrate as terminal electron acceptors in the presence of H-2 but not sulfate, sulfite nor nitrite. The major cellular fatty acids were C-16 : 0 (17.4 %), C-18 : 1 omega 7c/C-18 : 1 omega 6c (ummed feature 8, 37.91 %), C-18 : 0 (18.29 %) and... |
| Tipo: Text |
Palavras-chave: Desulfurobacterium; Thermophilic; Hydrothermal vent; Chemolithoautotroph; Sulfur-reducer. |
| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00395/50637/53724.pdf |
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| Zeppilli, Daniela; Bellec, Laure; Cambon-bonavita, Marie-anne; Decraemer, Wilfrida; Fontaneto, Diego; Fuchs, Sandra; Gayet, Nicolas; Mandon, Perrine; Michel, Loic; Portail, Marie; Smol, Nic; Sørensen, Martin V.; Vanreusel, Ann; Sarrazin, Jozee. |
| Background Nematodes are an important component of deep-sea hydrothermal vent communities, but only few nematode species are able to cope to the harsh conditions of the most active vent sites. The genus Oncholaimus is known to tolerate extreme geothermal conditions and high sulphide concentrations in shallow water hydrothermal vents, but it was only occasionally reported in deep-sea vents. In this study, we performed morphological, genetic and ecological investigations (including feeding strategies) on an abundant species of Oncholaimus recently discovered at Lucky strike vent field on the Mid-Atlantic Ridge at 1700 m water depth. Results We described this species as Oncholaimus dyvae sp. nov.. This new species differs from all other members of the genus... |
| Tipo: Text |
Palavras-chave: Oncholaimus dyvae sp. nov.; Hydrothermal vents; Deep sea; Carbon and nitrogen isotopic ratios. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00508/61985/66097.pdf |
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| Cruaud, Perrine; Decker, Carole; Olu, Karine; Arnaud-haond, Sophie; Papot, Claire; Le Baut, Jocelyn; Vigneron, Adrien; Khripounoff, Alexis; Gayet, Nicolas; Cathalot, Cecile; Caprais, Jean-claude; Pignet, Patricia; Godfroy, Anne; Cambon Bonavita, Marie-anne. |
| This study provides an analysis of vesicomyid bivalve–symbiont community distribution across cold seep and hydrothermal vent areas in the Guaymas Basin (Gulf of California, Mexico). Using a combination of morphological and molecular approaches including fluorescent in situ hybridization (FISH), and electronic microscopy observations, vesicomyid clam species and their associated symbionts were characterized and results were analyzed in light of geochemical conditions and other on‐site observations. A greater diversity of vesicomyids was found at cold seep areas, where three different species were present (Phreagena soyoae [syn. kilmeri], Archivesica gigas, and Calyptogena pacifica). In contrast, A. gigas was the only species sampled across the hydrothermal... |
| Tipo: Text |
Palavras-chave: Deep-sea ecosystems; Guaymas Basin; Marine ecology; Pliocardinae bivalve; Sulfur storage; Vesicomyid movements. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00493/60426/64028.pdf |
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| Methou, Pierre; Hernández-ávila, Ivan; Aube, Johanne; Cueff-gauchard, Valerie; Gayet, Nicolas; Amand, Louis; Shillito, Bruce; Pradillon, Florence; Cambon-bonavita, Marie-anne. |
| Rimicaris exoculata is one of the most well-known and emblematic species of endemic vent fauna. Like many other species from these ecosystems, Rimicaris shrimps host important communities of chemosynthetic bacteria living in symbiosis with their host inside the cephalothorax and gut. For many of these symbiotic partners, the mode of transmission remains to be elucidated and the starting point of the symbiotic relationship is not yet defined, but could begin with the egg. In this study, we explored the proliferation of microbial communities on R. exoculata broods through embryonic development using a combination of NGS sequencing and microscopy approaches. Variations in abundance and diversity of egg microbial communities were analyzed in broods at... |
| Tipo: Text |
Palavras-chave: Hydrothermal; Shrimp; Microbial colonization; Alvinocarididae; Egg development. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00489/60067/63352.pdf |
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| Fontanier, Christophe; Garnier, Eline; Brandily, Christophe; Dennielou, Bernard; Bichon, S.; Gayet, Nicolas; Eugene, Thibaut; Rovere, Mickael; Gremare, A.; Deflandre, B.. |
| Live (Rose-Bengal stained) deep-sea foraminiferal faunas have been studied at four stations between 530–3200-m depth in the Mozambique Channel (eastern Africa) to understand how complex environmental conditions (e.g., organic matter, oxygenation) control their ecological structure (i.e., diversity, density, and microhabitats). Two upper-slope stations, located at 530- and 780-m depth off Madagascar, are bathed by well-oxygenated bottom waters. They are characterized by fine sediments enriched in highly degraded organic matter (low amino-acid bio-availability and reduced chlorophyllic freshness). Mineralization of organic compounds results in relatively moderate oxygen penetration depth (i.e., 15 and 30 mm) in sediment. Interestingly, foraminiferal species... |
| Tipo: Text |
Palavras-chave: Mozambique Channel; Foraminifera; Diversity; Microhabitat; Organic matter. |
| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00344/45505/45057.pdf |
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| Fontanier, Christophe; Dissard, D.; Ruffine, Livio; Mamo, B.; Ponzevera, Emmanuel; Pelleter, Ewan; Baudin, F.; Roubi, Angelique; Cheron, Sandrine; Boissier, Audrey; Gayet, Nicolas; Bermell-fleury, S.; Pitel, M.; Guyader, Vivien; Lesongeur, Francoise; Savignac, F.. |
| In this preliminary study, we investigate living (stained) foraminifera from the Sea of Marmara. We focus on the faunal composition and geochemical signatures (trace elements, carbon and oxygen stable isotopes) in foraminiferal tests at two deep-sea sites (329 and ~1240 m depth respectively). Documented by ROV observations and sampling, both study areas are heterogeneous (including bacterial mats and carbonate concretions), proximal to cold seeps and consist of dysoxic bottom water (O2<20 µmol/L). The prevailing dysoxia at both study areas restricts foraminiferal diversity to very low values (S<9, H’<0.97). Stress-tolerant species Bolivina vadescens and Globobulimina affinis dominate living faunas at both sites. The highest foraminiferal standing... |
| Tipo: Text |
Palavras-chave: Living (stained) benthic foraminifera; Sea of Marmara; Extreme ecosystems; Trace elements; Stable isotopes. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00416/52774/53646.pdf |
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| Bellec, Laure; Cambon-bonavita, Marie-anne; Durand, Lucile; Aube, Johanne; Gayet, Nicolas; Sandulli, Roberto; Brandily, Christophe; Zeppilli, Daniela. |
| Shallow-water hydrothermal vents are widespread, especially in the Mediterranean Sea, owing to the active volcanism of the area. Apart free microbial communities’ investigations, few biological studies have been leaded yet. Investigations of microbial communities associated with Nematoda, an ecologically important group in sediments, can help to improve our overall understanding of these ecosystems. We used a multidisciplinary-approach, based on microscopic observations (scanning electron microscopy: SEM and Fluorescence In Situ Hybridization: FISH) coupled with a molecular diversity analysis using metabarcoding, based on the 16S rRNA gene (V3-V4 region), to characterize the bacterial community of a free-living marine nematode and its environment, the... |
| Tipo: Text |
Palavras-chave: Nematode; Shallow-water hydrothermal vent; Sulfur-oxidizing bacteria; Iron cycle; Zetaproteobacteria. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00643/75544/76449.pdf |
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| Cao, Junwei; Gayet, Nicolas; Zeng, Xiang; Shao, Zongze; Jebbar, Mohamed; Alain, Karine. |
| A novel sulfate-reducing bacterium, strain J2(T), was isolated from a serpentinized peridotite sample from the Indian Ocean. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain J2(T) clustered with the genus Desulfovibrio within the family Desulfovibrionaceae, but it showed low similarity (87.95 %) to the type species Desulfovibrio desulfuricans DSM 642(T). It was most closely related to Desulfovibrio portus MSL79(T) (96.96 %), followed by Desulfovibrio aespoeensis Aspo-2(T) (96.11 %), Desulfovibrio piezophilus C1TLV30(T) (96.04 %) and Desulfovibrio profundus DSM 11384(T) (95.17 %). Other available sequences shared less than 93.33 % 16S rRNA gene sequence similarity. Cells were Gram-staining-negative, anaerobic, motile vibrios (2-6 x... |
| Tipo: Text |
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| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00359/47018/47131.pdf |
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| Rabouille, C.; Olu, Karine; Baudin, F.; Khripounoff, Alexis; Dennielou, Bernard; Arnaud-haond, Sophie; Babonneau, Nathalie; Bayle, Christophe; Beckler, J.; Bessette, Sandrine; Bombled, B.; Bourgeois, S.; Brandily, Christophe; Caprais, Jean-claude; Cathalot, Cecile; Charlier, K.; Corvaisier, R.; Croguennec, Chantal; Cruaud, Perrine; Decker, Carole; Droz, L.; Gayet, Nicolas; Godfroy, Anne; Hourdez, S.; Le Bruchec, J.; Saout, Johan; Le Saout, Marie-helene; Lesongeur, Francoise; Martinez, P.; Mejanelle, L.; Michalopoulos, P.; Mouchel, Olivier; Noel, Philippe; Pastor, Lucie; Picot, M.; Pignet, Patricia; Pozzato, L.; Pruski, A. M.; Rabiller, Manuella; Raimonet, M.; Ragueneau, O.; Reyss, J. L.; Rodier, Philippe; Ruesch, Blandine; Ruffine, Livio; Savignac, F.; Senyarich, C.; Schnyder, J.; Sen, Arunima; Stetten, E.; Sun, Ming Yi; Taillefert, M.; Teixeira, S.; Tisnerat-laborde, N.; Toffin, Laurent; Tourolle, Julie; Toussaint, F.; Vetion, G.; Jouanneau, J. M.; Bez, M.. |
| The presently active region of the Congo deep-sea fan (around 330 000 km2), called the terminal lobes or lobe complex, covers an area of 2500 km2 at 4700–5100 m water depth and 750–800 km offshore. It is a unique sedimentary area in the world ocean fed by a submarine canyon and a channel-levee system which presently deliver large amounts of organic carbon originating from the Congo River by turbidity currents. This particularity is due to the deep incision of the shelf by the Congo canyon, up to 30 km into the estuary, which funnels the Congo River sediments into the deep-sea. The connection between the river and the canyon is unique for major world rivers. In 2011, two cruises (WACS leg 2 and Congolobe) were conducted to simultaneously investigate the... |
| Tipo: Text |
Palavras-chave: Chemosynthetic habitats; Congo deep-sea fan; Fine sediment; Sedimentation rate; Seafloor morphology; Turbidite; Vesicomyidae. |
| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00335/44580/44298.pdf |
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| Simon-colin, Christelle; Gueguen, Yannick; Bachere, Evelyne; Kouzayha, Achraf; Saulnier, Denis; Gayet, Nicolas; Guezennec, Jean. |
| Cultured pearls are the product of grafting and rearing of Pinctada margaritifera pearl oysters in their natural environment. Nucleus rejections and oyster mortality appear to result from bacterial infections or from an inappropriate grafting practice. To reduce the impact of bacterial infections, synthetic antibiotics have been applied during the grafting practice. However, the use of such antibiotics presents a number of problems associated with their incomplete biodegradability, limited efficacy in some cases, and an increased risk of selecting for antimicrobial resistant bacteria. We investigated the application of a marine antimicrobial peptide, tachyplesin, which is present in the Japanese horseshoe crab Tachypleus tridentatus, in combination with... |
| Tipo: Text |
Palavras-chave: Pearl oyster; Exopolysaccharide; Tachyplesin; Antimicrobial. |
| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00275/38599/37128.pdf |
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| Registros recuperados: 16 | |
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